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Recherche
Amaury Lambert
Chercheur
Professeur des universités, Co-PI of SMILE, Dean of Biology
Biologie
Mathématiques
Probabilités, Processus stochastiques, phylogénétique, macro-évolution, spéciation, évolution moléculaire, évolution somatique, global change ecology
ENS-PSL
Département de biologie
Publié le
6 février 2024
, modifié le
26 février 2024
Mathematician by background, I teach mathematics and mathematics applied to ecology and evolution at ENS. In 2012, I founded SMILE – "Stochastic Models for the Inference of Life Evolution", a research group hosted at CIRB (Collège de France) and IBENS which gathers biologists and mathematicians modeling and inferring evolutionary processes at various scales of time, space and taxonomy, ranging from population genetics to epidemiology and ecology, and from somatic evolution (development, immunity, cancer) to the biology of environmental change (adaptation, conservation genomics) and macro-evolution (diversification of species and of nucleic acid sequences).
I dedicate time to the promotion of open access publication (Peer Community In, Mersenne) and to mitigating/adapting to global change through: 1) reducing research carbon emissions (Greencom@CIRB and @IBENS) and 2) designing higher education curricula dedicated to ecological and social transitions.
Publications
Godfroid, M., Coluzzi, C., Lambert, A., Glaser, P., Rocha, E.P.C., Achaz, G. (2024)
Evo-Scope: Fully automated assessment of correlated evolution on phylogenetic trees
Methods Ecol. Evol. 00 1-8 (early view)
Gamblin, J., Gandon, S., Blanquart, F., Lambert, A. (2023)
Bottlenecks can constrain and channel evolutionary paths
Genetics 224(2)
Pénisson, S., Lambert, A., Tomasetti, C. (2022)
Evaluating cancer etiology and risk with a mathematical model of tumor evolution
Nature Communications 13(7224)
Lambert, A. (2021)
A mathematical assessment of the efficiency of quarantining and contact tracing in curbing the COVID-19 epidemic
Math. Mod. Nat. Phen. 16(53)
Lambert, A., Miro Pina, V., Schertzer, E. (2021)
Chromosome painting: how recombination mixes ancestral colors
Ann. Appl. Prob. 31(2) 826-864
Manceau*, M., Marin*, J., Morlon, H., Lambert, A. (2020)
Model-based inference of punctuated molecular evolution
Mol. Biol. Evol. 37(11) 3308-3323
Bienvenu, F., Débarre, F., Lambert, A. (2019)
The split-and-drift random graph, a null model for speciation
Stoch. Proc. Appl. 129(6) 2010-2048
Maliet, O., Gascuel, F., Lambert, A. (2018)
Ranked tree shapes, non-random extinctions and the loss of phylogenetic diversity
Systematic Biology 67(6) 1025–1040
Lambert, A. (2017)
Probabilistic models for the (sub)Tree(s) of Life
Brazil. J. Probab. Statist. 31(3) 415-475
Alexander, H.K., Lambert, A., Stadler, T. (2016)
Quantifying age-dependent extinction from species phylogenies
Systematic Biology 65(1) 35-50
Régnier, C.*, Achaz, G.*, Lambert, A., Cowie, R.H., Bouchet, P., Fontaine, B. (2015)
Mass extinction in poorly known taxa
PNAS 112(25) 7761-7766
Etienne, R.S., Morlon, H., Lambert, A. (2014)
Estimating the duration of speciation from phylogenies
Evolution 68(8) 2430-2440
Aguilée, R., Claessen, D., Lambert, A. (2013)
Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics.
Evolution 67(5) 1291-1306
Puillandre, N., Lambert, A., Brouillet, S., Achaz, G. (2012)
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
Mol. Ecol. 21(8) 1864-1877